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April 28, 2023April 28, 2023

Penn Bioengineering Senior Design Team “Sonura” Wins 2023 President’s Innovation Prize

Gabriella Daltoso, Sophie Ishiwari, Gabriela Cano, Caroline Amanda Magro, and Tifara Eliana Boyce pose on College Green. — Sonura

University of Pennsylvania President Liz Magill announced on April 21, the recipients of the 2023 President’s Engagement and Innovation Prizes.

Awarded annually, the Prizes empower Penn students to design and undertake post-graduation projects that make a positive, lasting difference in the world. Each Prize-winning project will receive $100,000, as well as a $50,000 living stipend per team member. The Prizes are the largest of their kind in higher education. All Prize recipients collaborate with a Penn faculty mentor.

A team of fourth-year Bioengineering majors, Gabriella Daltoso, Sophie Ishiwari, Gabriela Cano, Caroline Amanda Magro, and Tifara Eliana Boyce, have received the President’s Innovation Prize for their project, Sonura.

“This year’s President’s Engagement and Innovation Prize recipients are fueled by a desire to make a difference—in their community, across the country, and around the world,” Magill said. “Communities for Childbirth, Act First, and Sonura embody an inspiring blend of passion and purpose. They are addressing consequential challenges with compelling solutions, and their dedication and smarts are exemplary. I congratulate them and wish them success as they launch and grow their ventures.”

The 2023 Prize recipients—selected from an applicant pool of 76—will spend the next year implementing the projects:

Gabriella Daltoso, Sophie Ishiwari, Gabriela Cano, Caroline Amanda Magro, and Tifara Eliana Boyce for Sonura: Daltoso, from Boise, Idaho; Ishiwari, from Chicago; Cano, from Lawrenceville, New Jersey; Magro, from Alexandria, Virginia; and Boyce, from Jamaica, Queens, New York, are bioengineering majors in the School of Engineering and Applied Science. Their startup, Sonura, is developing a beanie that promotes the cognitive and socioemotional development of newborns in the NICU by protecting them from the auditory hazards of their environments while fostering parental connection. The Sonura Beanie is composed of a frequency-dependent filter and a mobile application. The Sonura team is mentored by Brian Halak, a lecturer in the Engineering Entrepreneurship program. Sonura was developed in Penn’s Stephenson Foundation Bio-MakerSpace and was part of their Bioengineering Senior Design class.

To learn more about the 2023 President’s Engagement and Innovation Prizes, visit Penn Today.

April 27, 2023May 1, 2023

2023 Undergraduate Awards for Bioengineering Students

Congratulations to the Bioengineering student recipients of undergraduate awards from the School of Engineering and Applied Science for the 2022-2023 academic year. These awards are given annually by the school and the department in recognition of outstanding scholarship and service. Read the full list of Bioengineering undergraduate award winners below.

The Wolf-Hallac Award: Sofia Mouchtaris. This award was established in October 2000 to recognize the graduating female senior from across Penn Engineering’s departments who is seen as a role model, has achieved a high GPA (in the top 10% of their class), and who has demonstrated a commitment to school and/or community.

The Management and Technology Scholarship Award: Savan Patel. This prize is awarded by the SEAS faculty to that member of the senior class in the Jerome Fisher Management and Technology Program who has created an innovative system and attained high scholastic achievement.

The Hugo Otto Wolf Memorial Prize: Joshua Freedman & Le He. This prize is awarded to one or more members of each department’s senior class, distinguishing students who meet with great approval of the professors at large through “thoroughness and originality” in their work.

The Herman P. Schwan Award: Laila Norford. This department award honors a graduating senior who demonstrates the “highest standards of scholarship and academic achievement.”

Exceptional Service Awards recognize students for their outstanding service to the University and their larger communities: Dylan Hurok, Julia Lottman, Caroline Magro & Grace Qian.

The Student Leadership Award: Moses Zeidan. This award is given annually to a student in Bioengineering who has demonstrated, through a combination of academic performance, service, leadership, and personal qualities, that they will be a credit to the Department, the School, and the University.

Additionally, the Bioengineering Department also presents a single lab group with the Albert Giandomenico Award which reflects their “teamwork, leadership, creativity, and knowledge applied to discovery-based learning in the laboratory.” This year’s group consists of Ella Atsavapranee, Jake Becker, Ruoming Fan & Savan Patel, aka Team StablEyes.

The awardees above were recognized at the annual Penn Engineering Awards Ceremony held Wednesday, March 29, 2023 in the Harrison Auditorium, Penn Museum.

Three Bioengineering Senior Design teams were chosen for recognition in the Bioengineering Senior Design Competition:

Team BAMBI: Ria Dawar, Pallavi Jonnalagadda, Jessica Ling, & Grace Qian. BAMBI (Biointelligent Apnea Monitor for Bradycardia-Prone Infants) is a tripartite system that leverages machine learning and automated mechanical stimulation to detect and treat apnea of prematurity in the NICU.

Team StablEyes: Ella Atsavapranee, Jake Becker, Ruoming Fan, & Savan Patel. StablEyes consists of a stabilization mount that provides fine, motorized control of the handheld OCT to improve ease of use for physicians and machine learning-based software to aid in diagnosis from retinal images.

Team inSPIRE: Jackson Dooley, Joshua Freedman,Yi-An Hsieh, Isabella Mirro, & Parth Mody. inSPIRE is the first smart incentive spirometer, used post-operatively to improve patient outcomes and reduce costs associated with complications and readmissions.

These teams will compete in the Penn Engineering Senior Design Competition on Friday, April 28, 2023.

Research for these projects was conducted in the George H. Stephenson Foundation Education Laboratory & Bio-Maker Space. Learn about all the 2023 Senior Design projects and view their final presentations on the Stephenson Bio-MakerSpace website here.

A full list of Penn Engineering award descriptions and recipients can be found here.

April 20, 2023April 18, 2023

Penn Bioengineering Alumnus Michael Magaraci Featured with New Haven Recycling Startup

Recycling bin full of plastic water bottles. — Credit: sdominick/Getty Images.

Michael Magaraci, Research Scientist at Protein Evolution and alumnus of Penn Bioengineering, featured in CT Insider for the New Haven, CT startup’s quest to replace the global recycling system. The company, founded in 2021, is working on methods to eventually recycle polyester fabrics, rugs, and other materials that end up in landfills. Magaraci, who serves as director of platform engineering, earned a bachelor’s degree in Bioengineering and Economics in the Jerome Fisher Program in Management & Technology from Penn Engineering and the Wharton School of Business in 2013. He stayed with Penn Bioengineering for his doctoral research, completed in 2021. During his time at Penn, he worked as a Teaching Assistant and Laboratory Technician, advised Penn iGEM Teams, and served with Engineers Without Borders.

Read “Meet the New Haven startup that wants to digest your plastic” in CT Insider.

April 12, 2023

LeAnn Dourte Receives the Provost’s Award for Teaching Excellence by Non-Standing Faculty

by Olivia J. McMahon

LeAnn Dourte, Practice Associate Professor in Bioengineering, has been awarded a 2023 Provost’s Award for Teaching Excellence by Non-Standing Faculty.

“This award reflects LeAnn’s innovation and dedication in teaching our students in Bioengineering’s biomechanics, biomaterials and biomechatronics classes and labs,” says Ravi Radhakrishnan, Professor and Chair of Bioengineering. “She is a core member of our teaching faculty, spearheading the Department’s initiatives to improve experiential learning and classroom experiences through the SAIL model of education.”

The Structured, Active, In-Class Learning (or SAIL) model of education emphasizes teamwork and dynamic problem-solving. According to Penn’s Center for Teaching and Learning (CTL), SAIL “provides students with the opportunity to struggle through the application of course ideas and material, often the most difficult part of learning for students, with guidance from instructors as well as help from their peers.”

In addition to her pedagogical interests, Dourte serves on the Bioengineering Climate Committee and is also highly involved in student wellness programming, serving as the Department’s Wellness Ambassador for the School.

The Provost’s Awards for Teaching Excellence by Non-Standing Faculty were established in 1988.

Read “Two Penn Engineers Receive 2023 Provost’s Teaching Awards” in Penn Engineering Today.

April 10, 2023

Sharon Kuo Receives Inaugural Madison ‘Maddie’ Magee Award for Undergraduate Excellence

Sharon Kuo, a graduating senior in Mechanical Engineering and Applied Mechanics (MEAM), is the inaugural recipient of the Madison “Maddie” Magee Award for Undergraduate Excellence.

Kuo, who is also minoring in Mathematics, comes to Penn from Taipei, Taiwan. Her interests within her major include mechanical design and product design, and she is passionate about space exploration and advancing human spaceflight.

This award will continue to be presented each year to a Penn Engineering senior who best exemplifies the energy, enthusiasm and excellence that was Maddie.

Read the full story in Penn Engineering Today.

The award for Undergraduate Excellence was established in honor of Madison “Maddie” N. Magee, who graduated with both a bachelor’s degree in Mechanical Engineering and Applied Mechanics (MEAM) and a master’s degree in Bioengineering (BE) in 2021. Maddie passed away while hiking the Pacific Crest Trail on May 28, 2022. Read more about this award here.

April 5, 2023April 4, 2023

Novel Tools for the Treatment and Diagnosis of Epilepsy

by Nathi Magubane

A neurologist examines an encephalogram of a patient’s brain. — Throughout his career, Brian Litt has fabricated tools that support international collaboration, produced findings that have led to significant breakthroughs, and mentored the next generation of researchers tackling neurological disorders. (Image: iStock Photo/Alona Siniehina)

When Brian Litt of the Perelman School of Medicine and School of Engineering and Applied Science began treating patients as a neurologist, he found that the therapies and treatments for epilepsy were mostly reliant on traditional pharmacological interventions, which had limited success in changing the course of the disease.

People with epilepsy are often prescribed anti-seizure medications, and, while they are effective for many, about 30% of patients still continue to experience seizures. Litt sought new ways to offer patients better treatment options by investigating a class of devices that electronically stimulate cells in the brain to modulate activity known as neurostimulation devices.

Litt’s research on implantable neurostimulation devices has led to significant breakthroughs in the technology and has broadened scientists’ understanding of the brain. This work started not long after he came to Penn in 2002 with licensing algorithms to help drive a groundbreaking device by NeuroPace, the first closed-loop, responsive neurostimulator to treat epilepsy.

Building on this work, Litt noted in 2011 how the implantable neurostimulation devices being used at the time had rigid wires that didn’t conform to the brain’s surface, and he received support from CURE Epilepsy to accelerate the development of newer, flexible wires to monitor and stimulate the brain.

“CURE is one of the epilepsy community’s most influential funding organizations,” Litt says. “Their support for my lab has been incredibly helpful in enabling the cutting-edge research that we hope will change epilepsy care for our patients.”

Read the full story in Penn Today.

Brian Litt is a Professor in Bioengineering and Neurology.

Flavia Vitale is an Assistant Professor in Neurology with a secondary appointment in Bioengineering.

Jonathan Viventi is an Assistant Professor in Biomedical Engineering at Duke University.

April 4, 2023April 3, 2023

Penn Bioengineering Student Angela Song Named Goldwater Scholar

by Amanda Mott & Louisa Shepard

Four University of Pennsylvania undergraduates have received 2023 Goldwater Scholarships, awarded to second- or third-year students planning research careers in mathematics, the natural sciences, or engineering.

They are among the 413 students named 2023 Goldwater Scholars from more than 5,000 students nominated by 427 academic institutions in the United States, according to the Barry Goldwater Scholarship & Excellence in Education Foundation. Each scholarship provides as much as $7,500 each year for as many as two years of undergraduate study.

Penn has produced 59 Goldwater Scholars since Congress established the scholarship in 1986 to honor U.S. Senator Barry Goldwater.

Angela Song, from Princeton Junction, New Jersey, is a third-year majoring in bioengineering in the School of Engineering and Applied Science. She is interested in engineering molecular therapeutics for disease. She works in Douglas C. Wallace’s lab in the Center for Mitochondrial and Epigenomic Medicine at the Children’s Hospital of Philadelphia, focusing on designing engineered proteins with mitochondrial applications. At Penn, Song is the vice president of design for UnEarthed, a student-published educational magazine for West Philadelphia elementary school children, and president of the Penn American Red Cross Club. After graduating, Song plans to continue pursuing research through a Ph.D. in bioengineering.

Read the full list of Penn 2023 Goldwater Scholars in Penn Today.

Read about previous Penn Bioengineering Goldwater Scholars here.

April 3, 2023

Brit Shields Wins Inaugural Penn Engineering Student Advocacy Award

Penn Engineering announced the faculty recipients of the 2023 Student Choice Awards (formerly the Teaching and Advising Awards). Each year, the Penn Engineering undergraduate student body thoughtfully selects the recipients of these awards for their dedication in teaching, mentorship and student advocacy. This year also features two new awards, the Student Advocacy Award and the Undergraduate Research Mentoring Award.

Brit Shields, Senior Lecturer in Bioengineering, is the inaugural recipient of the Student Advocacy Award. This award is presented to a member of the Penn Engineering faculty by the Underrepresented Student Advisory Board in Engineering in recognition of their outstanding commitment to women and underrepresented student advocacy, equity and inclusion.

Dr. Shields poses with her award at the annual Penn Engineering Awards Ceremony.

Shields completed a Ph.D. at Penn in 2015 in History and Sociology of Science, with a dissertation on scientific diplomacy through the example of Richard Courant and New York University, where Shields completed an M.A. in Humanities and Social Thought: Science Studies.

She was promoted to Senior Lecturer in Bioengineering in 2019. She has brought her expertise in the history and sociology of science to her leading role in developing and improving the ethics curriculum for all students in the School of Engineering and Applied Science.

Read other stories featuring Brit Shields in the BE Blog.

Read the full list of 2023 Penn Engineering Student Choice Award Winners in Penn Engineering Today.

March 28, 2023

César de la Fuente Named AIMBE Fellow

by Holly Wojcik

César de la Fuente, Presidential Assistant Professor in Psychiatry, Microbiology, Bioengineering and in Chemical and Biomolecular Engineering, has been named an American Institute for Medical and Biological Engineering (AIMBE) Fellow. The only faculty member inducted this year from the University of Pennsylvania, de la Fuente is one of the youngest members ever to have been selected as an AIMBE Fellow.

Election to the AIMBE College of Fellows is among the highest professional distinctions accorded to a medical and biological engineer, with AIMBE Fellows representing the top 2% of medical and biological engineers. College membership honors those who have made outstanding contributions to “engineering and medicine research, practice, or education” and to “the pioneering of new and developing fields of technology, making major advancements in traditional fields of medical and biological engineering, or developing/implementing innovative approaches to bioengineering education.”

Nominated and reviewed by peers and members of the College of Fellows, de la Fuente was elected Fellow “for the development of novel antimicrobial peptides designed using principles from computation, engineering and biology.”

A formal ceremony will be held during the AIMBE Annual Event in Arlington, Virginia on March 27, 2023, where de la Fuente will be inducted along with 140 colleagues who make up the AIMBE College of Fellows Class of 2023.

AIMBE Fellows are among the most distinguished medical and biological engineers, including 3 Nobel Prize laureates and 17 Fellows having received the Presidential Medal of Science and/or Technology and Innovation, along with 205 having been inducted into the National Academy of Engineering, 105 into the National Academy of Medicine and 43 into the National Academy of
Sciences.

This story was originally posted in Penn Engineering Today.

Read more stories featuring César de la Fuente here.

March 24, 2023March 23, 2023

More Cancers May be Treated with Drugs than Previously Believed

by Alex Gardner

3D illustration of cancer cells — nucleus and membrane of pathogen micro organisms in blue background

Up to 50 percent of cancer-signaling proteins once believed to be immune to drug treatments due to a lack of targetable protein regions may actually be treatable, according to a new study from the Perelman School of Medicine at the University of Pennsylvania. The findings, published this month in Nature Communications, suggest there may be new opportunities to treat cancer with new or existing drugs.

Researchers, clinicians, and pharmacologists looking to identify new ways to treat medical conditions—from cancer to autoimmune diseases—often focus on protein pockets, areas within protein structures to which certain proteins or molecules can bind. While some pockets are easily identifiable within a protein structure, others are not. Those hidden pockets, referred to as cryptic pockets, can provide new opportunities for drugs to bind to. The more pockets scientists and clinicians have to target with drugs, the more opportunities they have to control disease.

The research team identified new pockets using a Penn-designed neural network, called PocketMiner, which is artificial intelligence that predicts where cryptic pockets are likely to form from a single protein structure and learns from itself. Using PocketMiner—which was trained on simulations run on the world’s largest super computer—researchers simulated single protein structures and successfully predicted the locations of cryptic pockets in 35 cancer-related protein structures in thousands of areas of the body. These once-hidden targets, now identified, open up new approaches for potentially treating existing cancer.

What’s more, while successfully predicting the cryptic pockets, the method scientists used in this study was much faster than previous simulation or machine-learning methods. The network allows researchers to nearly instantaneously decide if a protein is likely to have cryptic pockets before investing in more expensive simulations or experiments to pursue a predicted pocket further.

“More than half of human proteins are considered undruggable due to an apparent lack of binding proteins in the snapshots we have,” said Gregory R. Bowman, PhD, a professor of Biochemistry and Biophysics and Bioengineering at Penn and the lead author of the study. “This PocketMiner research and other research like it not only predict druggable pockets in critical protein structures related to cancer but suggest most human proteins likely have druggable pockets, too. It’s a finding that offers hope to those with currently untreatable diseases.”

Read the full story in Penn Medicine News.