Optogenetic Functional Profiling Indicates New Mechanisms of Drug Tolerance in Cancer Cells

While modern cancer treatments can have tremendous therapeutic impact, formidable obstacles remain. Foremost among these is drug resistance, the ability of cancers to withstand and ultimately progress despite the presence of an anti-cancer drug. However, ongoing research provides hope that these challenges can be overcome, including recent work performed by Penn Engineers.

The lab of Lukasz J. Bugaj, Assistant Professor in the Department of Bioengineering, recently published an article that uncovers new mechanisms of how oncogenes interact  with important pathways of cellular signaling that are associated with resistance. This work, titled “Oncogenic EML4-ALK Assemblies Suppress Growth Factor Perception and Modulate Drug Tolerance,” applied a new technique called ‘optogenetic functional profiling’ that allowed measurement of how important molecular signaling pathways respond to precise perturbations applied by the researchers.  By applying this technique to many different cell types, the group found important differences in resistance-associated signaling between cancer cells and healthy cells 

Specifically, the research showed that an oncogene called EML4-ALK, which activates oncogenic signaling, simultaneously inactivates adjacent pathways that can cause resistance.  As a consequence, once an oncogene-blocking drug is applied, the inactivation is relieved, thus boosting activity through these adjacent, resistance-associated pathways.  The study also showed that these pathways were not only de-repressed, but were actively stimulated by neighboring cancer cells, further enhancing cell survival in the presence of the drug. 

“Our work shows that oncogenes, while driving cell division in cancer cells, simultaneously suppress the cells’ regulation by their environment,” said Dr. Bugaj. “While the work reveals mechanisms of paradoxical responses to drug treatment related to resistance, they may also inspire new ideas for therapies that can more efficiently kill cancer cells while maintaining suppression of resistance signaling. This work was co-led by PhD student David Gonzalez-Martinez and by Lee Roth, PhD, a postdoctoral fellow, and was supported by a grant from the American Cancer Society. 

Dr. Bugaj’s article can be read here.

Loebel Lab Arrives in 2025

Reliance Industries Term Assistant Professor Claudia Loebel will establish her lab at The University of Pennsylvania’s Department of Bioengineering and the Center for Precision Engineering for Health in January 2025.

Dr. Loebel received her MD from Martin Luther University Halle Wittenberg, Germany and her Ph.D from ETH Zurich, Switzerland.

“My laboratory is developing testable models to investigate how extracellular signals regulate cellular function to direct the development and regeneration of organs, ultimately leading to more effective therapeutic treatments,” said Dr. Loebel in her research statement. “Building upon my K99/R00 and American Lung Association Innovation Awards, a major focus of my group has been on understanding the role of mechanical forces across various states of pulmonary development and regeneration.”

Dr. Loebel’s team is formed with an exciting combination of interdisciplinary scholars including postdoctoral associates, graduate and undergraduate students whose philosophy encourages respect for people’s differences, acknowledging and honoring religious and cultural practices, and foster diverse thinking. Dr. Loebel is also a recent recipient of the 2025 Rising Star Award from BMES CMBE, and also won the CMBE Young Innovators award for her published article, “Magnetoactive, Kirigami- Inspired Hammoks to Probe Lung Epithelial Cell Function.”

The Loebel Lab is funded by the David and Lucile Packard Foundation Fellowship, whose mission is dedicated to further the advancement of people and communities with their three overreaching and interdependent goals: building societies, protecting and restoring the natural world, and investing in families.